To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

In most cases, you don't need to download the package archive at all.

ggtree

   

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ggtree.

a phylogenetic tree viewer for different types of tree annotations

Bioconductor version: 3.1

ggtree extends the ggplot2 plotting system which implemented the grammar of graphics. ggtree is designed for visualizing phylogenetic tree and different types of associated annotation data.

Author: Guangchuang Yu and Tommy Tsan-Yuk Lam

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtree")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtree")

 

HTML R Script ggtree: a phylogenetic tree viewer for different types of tree annotations
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Clustering, DataImport, Software, Visualization
Version 1.0.21
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Artistic-2.0
Depends R (>= 3.1.0)
Imports ape, Biostrings, colorspace, EBImage, ggplot2, grid, gridExtra, jsonlite, magrittr, methods, reshape2, stats4
LinkingTo
Suggests phylobase, phytools, BiocStyle, knitr, testthat, rmarkdown
SystemRequirements
Enhances
URL https://github.com/GuangchuangYu/ggtree
BugReports https://github.com/GuangchuangYu/ggtree/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ggtree_1.0.21.tar.gz
Windows Binary ggtree_1.0.21.zip
Mac OS X 10.6 (Snow Leopard) ggtree_1.0.21.tgz
Mac OS X 10.9 (Mavericks) ggtree_1.0.21.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ggtree/tree/release-3.1
Package Short Url http://bioconductor.org/packages/ggtree/
Package Downloads Report Download Stats

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