To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("riboSeqR")

In most cases, you don't need to download the package archive at all.

riboSeqR

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments.

Bioconductor version: 3.0

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("riboSeqR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("riboSeqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")

 

PDF R Script riboSeqR
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Sequencing, Software, Visualization
Version 1.0.5
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL-3
Depends R (>= 3.0.2), methods, GenomicRanges, abind
Imports
LinkingTo
Suggests baySeq, BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source riboSeqR_1.0.5.tar.gz
Windows Binary riboSeqR_1.0.5.zip
Mac OS X 10.6 (Snow Leopard) riboSeqR_1.0.5.tgz
Mac OS X 10.9 (Mavericks) riboSeqR_1.0.5.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/riboSeqR/tree/release-3.0
Package Short Url http://bioconductor.org/packages/riboSeqR/
Package Downloads Report Download Stats

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