To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

In most cases, you don't need to download the package archive at all.

gwascat

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see gwascat.

representing and modeling data in the NHGRI GWAS catalog

Bioconductor version: 3.0

representing and modeling data in the NHGRI GWAS catalog

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gwascat")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gwascat")

 

PDF R Script gwascat -- exploring NHGRI GWAS catalog
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Software
Version 1.10.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports methods, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, snpStats, Biostrings, Rsamtools, rtracklayer
LinkingTo
Suggests DO.db, Gviz, ggbio, graph
SystemRequirements
Enhances SNPlocs.Hsapiens.dbSNP.20120608, pd.genomewidesnp.6
URL
Depends On Me vtpnet
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gwascat_1.10.0.tar.gz
Windows Binary gwascat_1.10.0.zip
Mac OS X 10.6 (Snow Leopard) gwascat_1.10.0.tgz
Mac OS X 10.9 (Mavericks) gwascat_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/gwascat/tree/release-3.0
Package Short Url http://bioconductor.org/packages/gwascat/
Package Downloads Report Download Stats

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