To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefu")

In most cases, you don't need to download the package archive at all.

genefu

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see genefu.

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: 3.0

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>, Markus Schroeder <markus.schroeder at ucdconnect.ie>

Citation (from within R, enter citation("genefu")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefu")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefu")

 

PDF R Script genefu An Introduction (HowTo)
PDF   Reference Manual
Text   README

Details

biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Version 1.16.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends survcomp, mclust, biomaRt, R (>= 2.10)
Imports amap
LinkingTo
Suggests GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable
SystemRequirements
Enhances
URL http://www.pmgenomics.ca/bhklab/
Depends On Me
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genefu_1.16.0.tar.gz
Windows Binary genefu_1.16.0.zip
Mac OS X 10.6 (Snow Leopard) genefu_1.16.0.tgz
Mac OS X 10.9 (Mavericks) genefu_1.16.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/genefu/tree/release-3.0
Package Short Url http://bioconductor.org/packages/genefu/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center