To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaga")

In most cases, you don't need to download the package archive at all.

gaga

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see gaga.

GaGa hierarchical model for high-throughput data analysis

Bioconductor version: 3.0

Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).

Author: David Rossell <rosselldavid at gmail.com>.

Maintainer: David Rossell <rosselldavid at gmail.com>

Citation (from within R, enter citation("gaga")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaga")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaga")

 

PDF R Script Manual for the gaga library
PDF   Reference Manual

Details

biocViews Classification, DifferentialExpression, MassSpectrometry, MultipleComparison, OneChannel, Software
Version 2.12.0
In Bioconductor since BioC 2.2 (R-2.7) (8 years)
License GPL (>= 2)
Depends R (>= 2.8.0), Biobase, coda, EBarrays, mgcv
Imports
LinkingTo
Suggests
SystemRequirements
Enhances parallel
URL
Depends On Me
Imports Me casper
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gaga_2.12.0.tar.gz
Windows Binary gaga_2.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) gaga_2.12.0.tgz
Mac OS X 10.9 (Mavericks) gaga_2.12.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/gaga/tree/release-3.0
Package Short Url http://bioconductor.org/packages/gaga/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center