To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affycoretools")

In most cases, you don't need to download the package archive at all.

affycoretools

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see affycoretools.

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: 3.0

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("affycoretools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affycoretools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycoretools")

 

PDF R Script affycoretools biomaRt Integration
PDF R Script affycoretools Overview
PDF R Script affycoretools, refactored
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.38.0
In Bioconductor since BioC 1.8 (R-2.3) (10 years)
License Artistic-2.0
Depends affy, Biobase, GO.db
Imports biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi, lattice, gplots, oligoClasses, ReportingTools, hwriter
LinkingTo
Suggests affydata, hgfocuscdf, rgl, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me AgiMicroRna
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affycoretools_1.38.0.tar.gz
Windows Binary affycoretools_1.38.0.zip
Mac OS X 10.6 (Snow Leopard) affycoretools_1.38.0.tgz
Mac OS X 10.9 (Mavericks) affycoretools_1.38.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affycoretools/tree/release-3.0
Package Short Url http://bioconductor.org/packages/affycoretools/
Package Downloads Report Download Stats

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