To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TDARACNE")

In most cases, you don't need to download the package archive at all.

TDARACNE

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see TDARACNE.

Network reverse engineering from time course data.

Bioconductor version: 3.0

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

Author: Zoppoli P.,Morganella S., Ceccarelli M.

Maintainer: Zoppoli Pietro <zoppoli.pietro at gmail.com>

Citation (from within R, enter citation("TDARACNE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TDARACNE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDARACNE")

 

PDF R Script TDARACNE
PDF   Reference Manual

Details

biocViews Microarray, Software, TimeCourse
Version 1.16.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL-2
Depends GenKern, Rgraphviz, Biobase
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TDARACNE_1.16.0.tar.gz
Windows Binary TDARACNE_1.16.0.zip
Mac OS X 10.6 (Snow Leopard) TDARACNE_1.16.0.tgz
Mac OS X 10.9 (Mavericks) TDARACNE_1.16.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/TDARACNE/tree/release-3.0
Package Short Url http://bioconductor.org/packages/TDARACNE/
Package Downloads Report Download Stats

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