To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNAGEE")

In most cases, you don't need to download the package archive at all.

SNAGEE

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see SNAGEE.

Signal-to-Noise applied to Gene Expression Experiments

Bioconductor version: 3.0

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

Author: David Venet <davenet at ulb.ac.be>

Maintainer: David Venet <davenet at ulb.ac.be>

Citation (from within R, enter citation("SNAGEE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNAGEE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNAGEE")

 

PDF R Script SNAGEE Vignette
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Software, TwoChannel
Version 1.6.0
In Bioconductor since BioC 2.12 (R-3.0) (3 years)
License Artistic-2.0
Depends R (>= 2.6.0), SNAGEEdata
Imports
LinkingTo
Suggests ALL, hgu95av2.db
SystemRequirements
Enhances parallel
URL http://bioconductor.org/
Depends On Me
Imports Me
Suggests Me SNAGEEdata
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SNAGEE_1.6.0.tar.gz
Windows Binary SNAGEE_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) SNAGEE_1.6.0.tgz
Mac OS X 10.9 (Mavericks) SNAGEE_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/SNAGEE/tree/release-3.0
Package Short Url http://bioconductor.org/packages/SNAGEE/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center