To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

In most cases, you don't need to download the package archive at all.

ReactomePA

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see ReactomePA.

Reactome Pathway Analysis

Bioconductor version: 3.0

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

Author: Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ReactomePA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomePA")

 

PDF R Script ReactomePA - an R package for Reactome Pathway Analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version 1.10.1
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License GPL-2
Depends
Imports DOSE, AnnotationDbi, reactome.db, org.Hs.eg.db, igraph, graphite
LinkingTo
Suggests clusterProfiler, GOSemSim, ChIPseeker, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me ChIPseeker, clusterProfiler, DOSE, GOSemSim
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ReactomePA_1.10.1.tar.gz
Windows Binary ReactomePA_1.10.1.zip
Mac OS X 10.6 (Snow Leopard) ReactomePA_1.10.1.tgz
Mac OS X 10.9 (Mavericks) ReactomePA_1.10.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ReactomePA/tree/release-3.0
Package Short Url http://bioconductor.org/packages/ReactomePA/
Package Downloads Report Download Stats

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