To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RUVSeq")

In most cases, you don't need to download the package archive at all.

RUVSeq

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see RUVSeq.

Remove Unwanted Variation from RNA-Seq Data

Bioconductor version: 3.0

This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.

Author: Davide Risso and Sandrine Dudoit

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("RUVSeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RUVSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVSeq")

 

PDF R Script RUVSeq: Remove Unwanted Variation from RNA-Seq Data
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Preprocessing, RNASeq, Software
Version 1.0.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends EDASeq(>= 1.99.1), edgeR
Imports methods, MASS
LinkingTo
Suggests BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RUVSeq_1.0.0.tar.gz
Windows Binary RUVSeq_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) RUVSeq_1.0.0.tgz
Mac OS X 10.9 (Mavericks) RUVSeq_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RUVSeq/tree/release-3.0
Package Short Url http://bioconductor.org/packages/RUVSeq/
Package Downloads Report Download Stats

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