To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

In most cases, you don't need to download the package archive at all.

MinimumDistance

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see MinimumDistance.

A package for de novo CNV detection in case-parent trios

Bioconductor version: 3.0

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at jhu.edu>

Citation (from within R, enter citation("MinimumDistance")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MinimumDistance")

 

PDF R Script Detection of de novo copy number alterations in case-parent trios
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, Microarray, SNP, Software
Version 1.10.2
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 3.01)
Imports oligoClasses, S4Vectors, VanillaICE(>= 1.28.1), Biobase, DNAcopy, BiocGenerics, ff, foreach, matrixStats, IRanges, lattice, GenomicRanges(>= 1.18.1), GenomeInfoDb, data.table, grid
LinkingTo
Suggests human610quadv1bCrlmm(>= 1.0.3), SNPchip, RUnit
SystemRequirements
Enhances snow, doSNOW
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MinimumDistance_1.10.2.tar.gz
Windows Binary MinimumDistance_1.10.2.zip
Mac OS X 10.6 (Snow Leopard) MinimumDistance_1.10.2.tgz
Mac OS X 10.9 (Mavericks) MinimumDistance_1.10.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MinimumDistance/tree/release-3.0
Package Short Url http://bioconductor.org/packages/MinimumDistance/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center