To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFplus")

In most cases, you don't need to download the package archive at all.

MSGFplus

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see MSGFplus.

An interface between R and MS-GF+

Bioconductor version: 3.0

This package contains function to perform peptide identification using MS-GF+

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("MSGFplus")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFplus")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSGFplus")

 

HTML R Script Using MSGFplus
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.0.5
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL (>= 2)
Depends methods
Imports mzID
LinkingTo
Suggests gWidgets, knitr, testthat
SystemRequirements Java (>= 1.7)
Enhances
URL
Depends On Me
Imports Me MSGFgui
Suggests Me RforProteomics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MSGFplus_1.0.5.tar.gz
Windows Binary MSGFplus_1.0.5.zip
Mac OS X 10.6 (Snow Leopard) MSGFplus_1.0.5.tgz
Mac OS X 10.9 (Mavericks) MSGFplus_1.0.5.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MSGFplus/tree/release-3.0
Package Short Url http://bioconductor.org/packages/MSGFplus/
Package Downloads Report Download Stats

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