To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")

In most cases, you don't need to download the package archive at all.

GenomicTuples

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see GenomicTuples.

Representation and manipulation of genomic tuples

Bioconductor version: 3.0

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("GenomicTuples")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicTuples")

 

PDF GenomicTuples: Classes and Methods
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 2.10), GenomicRanges(>= 1.17.46), GenomeInfoDb, methods
Imports Rcpp (>= 0.11.2), BiocGenerics, S4Vectors, Biobase
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle
SystemRequirements
Enhances
URL www.github.com/PeteHaitch/GenomicTuples
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenomicTuples_1.0.0.tar.gz
Windows Binary GenomicTuples_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GenomicTuples_1.0.0.tgz
Mac OS X 10.9 (Mavericks) GenomicTuples_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GenomicTuples/tree/release-3.0
Package Short Url http://bioconductor.org/packages/GenomicTuples/
Package Downloads Report Download Stats

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