To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSAR")

In most cases, you don't need to download the package archive at all.

GSAR

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see GSAR.

Gene Set Analysis in R

Bioconductor version: 3.0

Gene set analysis using specific alternative hypotheses. Tests for differential expression, scale and net correlation structure.

Author: Yasir Rahmatallah <yrahmatallah at uams.edu>, Galina Glazko <gvglazko at uams.edu>

Maintainer: Yasir Rahmatallah <yrahmatallah at uams.edu>, Galina Glazko <gvglazko at uams.edu>

Citation (from within R, enter citation("GSAR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSAR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSAR")

 

PDF R Script Gene Set Analysis in R -- the GSAR Package
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Software, StatisticalMethod
Version 1.0.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL (>=2)
Depends R (>= 3.0.1), igraph (>= 0.7.0)
Imports
LinkingTo
Suggests MASS, GSVAdata, ALL, tweeDEseqCountData, GSEABase, annotate, org.Hs.eg.db, Biobase, genefilter, hgu95av2.db, edgeR, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GSAR_1.0.0.tar.gz
Windows Binary GSAR_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) GSAR_1.0.0.tgz
Mac OS X 10.9 (Mavericks) GSAR_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GSAR/tree/release-3.0
Package Short Url http://bioconductor.org/packages/GSAR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center