To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Category")

In most cases, you don't need to download the package archive at all.

Category

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see Category.

Category Analysis

Bioconductor version: 3.0

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Category")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Category")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")

 

PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.32.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends methods, stats4, Matrix, BiocGenerics, AnnotationDbi, Biobase, GO.db
Imports methods, utils, stats, stats4, BiocGenerics, graph, Biobase, AnnotationDbi, RBGL, GSEABase(>= 1.19.3), genefilter, annotate(>= 1.15.6)
LinkingTo
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db, GOstats
SystemRequirements
Enhances
URL
Depends On Me GOstats, meshr, PCpheno
Imports Me categoryCompare, cellHTS2, eisa, gCMAP, GOstats, interactiveDisplay, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me BiocCaseStudies, cellHTS, GSEAlm, MmPalateMiRNA, qpgraph
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Category_2.32.0.tar.gz
Windows Binary Category_2.32.0.zip
Mac OS X 10.6 (Snow Leopard) Category_2.32.0.tgz
Mac OS X 10.9 (Mavericks) Category_2.32.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Category/tree/release-3.0
Package Short Url http://bioconductor.org/packages/Category/
Package Downloads Report Download Stats

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