To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("COPDSexualDimorphism")

In most cases, you don't need to download the package archive at all.

COPDSexualDimorphism

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see COPDSexualDimorphism.

Sexual dimorphic and COPD differential analysis for gene expression and methylation.

Bioconductor version: 3.0

Sexual dimoprhic and COPD differential (SDCD) analysis contrasts regression coefficients from two stratified analysis. Stratification can be done in two ways: by COPD status or by sex. For COPD-stratified analysis, SDCD analysis contrasts sexual dimorphism between cases and controls, while sex-stratified SDCD analsysis contrasts COPD differential expression pattern between males and females. The package is meant to be used in conjunction with the package limma.

Author: J Fah Sathirapongsasuti

Maintainer: J Fah Sathirapongsasuti <fah at cs.stanford.edu>

Citation (from within R, enter citation("COPDSexualDimorphism")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("COPDSexualDimorphism")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("COPDSexualDimorphism")

 

PDF R Script SDCD eQTL
PDF R Script SDCD Genes
PDF R Script SDCD Methylation
PDF   Reference Manual
Text   NEWS

Details

biocViews AssayDomain, DNAMethylation, DifferentialExpression, GeneExpression, Microarray, Software
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License LGPL-2.1
Depends COPDSexualDimorphism.data, NCBI2R, RColorBrewer, beeswarm, limma, GenomicRanges, gplots, gtools
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source COPDSexualDimorphism_1.2.0.tar.gz
Windows Binary COPDSexualDimorphism_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) COPDSexualDimorphism_1.2.0.tgz
Mac OS X 10.9 (Mavericks) COPDSexualDimorphism_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/COPDSexualDimorphism/tree/release-3.0
Package Short Url http://bioconductor.org/packages/COPDSexualDimorphism/
Package Downloads Report Download Stats

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