Last updated on 2024-09-27 15:51:01 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| pmartR | 2 | 11 |
Current CRAN status: ERROR: 2, NOTE: 11
Version: 2.4.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [49s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmartR)
>
> test_check("pmartR")
[ FAIL 1 | WARN 1 | SKIP 11 | PASS 2371 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test_as_trelliData.R:4:3', 'test_as_trelliData.R:361:3',
'test_as_trelliData_edata.R:4:3', 'test_as_trelliData_summary.R:4:3',
'test_diffexp_seq.R:4:3', 'test_imd_anova.R:5:3',
'test_imd_anova_paired.R:5:3', 'test_plots.R:14:3', 'test_trelliPlots.R:4:3',
'test_trelliPlots_seqData.R:4:3', 'test_trelli_pvalue_filter.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_dispersion_est.R:42:3'): dispersion_est returns the correct data frame and attributes ──
Error in `data.frame(CD = D_edgeR$common.dispersion, TD = D_edgeR$trended.dispersion,
TagD = D_edgeR$tagwise.dispersion, fitD1 = fit_edgeR$var.prior,
fitD2 = fit_edgeR$var.post, AveLogCPM = fit_edgeR$AveLogCPM)`: arguments imply differing number of rows: 1, 1200, 0
Backtrace:
▆
1. └─pmartR::dispersion_est(seqdata_grp, method = "edgeR") at test_dispersion_est.R:42:3
2. └─base::data.frame(...)
[ FAIL 1 | WARN 1 | SKIP 11 | PASS 2371 ]
Deleting unused snapshots:
• plots/plot-corres.svg
• plots/plot-cvfilt-log-scale.svg
• plots/plot-cvfilt.svg
• plots/plot-datares-bw-theme.svg
• plots/plot-datares-palette.svg
• plots/plot-datares.svg
• plots/plot-dimres.svg
• plots/plot-imdanovafilt.svg
• plots/plot-isobaricnormres-bw-theme.svg
• plots/plot-isobaricnormres-global-normalized.svg
• plots/plot-isobaricnormres-palette.svg
• plots/plot-isobaricnormres.svg
• plots/plot-isobaricpepdata.svg
• plots/plot-lipiddata.svg
• plots/plot-metabdata.svg
• plots/plot-moleculefilt-cumulative.svg
• plots/plot-moleculefilt.svg
• plots/plot-nares-bar-group-color.svg
• plots/plot-nares-bar-group-order.svg
• plots/plot-nares-scatter.svg
• plots/plot-nmrdata.svg
• plots/plot-nmrnormres-2.svg
• plots/plot-nmrnormres-color-by.svg
• plots/plot-nmrnormres.svg
• plots/plot-normres.svg
• plots/plot-pepdata.svg
• plots/plot-prodata.svg
• plots/plot-proteomicsfilt-redundancy.svg
• plots/plot-proteomicsfilt.svg
• plots/plot-rmdfilt.svg
• plots/plot-rnafilt.svg
• plots/plot-seqdata.svg
• plots/plot-spansres-bw-theme.svg
• plots/plot-spansres-color-high-color-low.svg
• plots/plot-spansres.svg
• plots/plot-statres-anova-volcano.svg
• plots/plot-statres-anova.svg
• plots/plot-statres-combined-volcano.svg
• plots/plot-statres-combined.svg
• plots/plot-statres-gtest.svg
• plots/plot-totalcountfilt.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.4.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [33s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pmartR)
>
> test_check("pmartR")
[ FAIL 1 | WARN 1 | SKIP 11 | PASS 2371 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test_as_trelliData.R:4:3', 'test_as_trelliData.R:361:3',
'test_as_trelliData_edata.R:4:3', 'test_as_trelliData_summary.R:4:3',
'test_diffexp_seq.R:4:3', 'test_imd_anova.R:5:3',
'test_imd_anova_paired.R:5:3', 'test_plots.R:14:3', 'test_trelliPlots.R:4:3',
'test_trelliPlots_seqData.R:4:3', 'test_trelli_pvalue_filter.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_dispersion_est.R:42:3'): dispersion_est returns the correct data frame and attributes ──
Error in `data.frame(CD = D_edgeR$common.dispersion, TD = D_edgeR$trended.dispersion,
TagD = D_edgeR$tagwise.dispersion, fitD1 = fit_edgeR$var.prior,
fitD2 = fit_edgeR$var.post, AveLogCPM = fit_edgeR$AveLogCPM)`: arguments imply differing number of rows: 1, 1200, 0
Backtrace:
▆
1. └─pmartR::dispersion_est(seqdata_grp, method = "edgeR") at test_dispersion_est.R:42:3
2. └─base::data.frame(...)
[ FAIL 1 | WARN 1 | SKIP 11 | PASS 2371 ]
Deleting unused snapshots:
• plots/plot-corres.svg
• plots/plot-cvfilt-log-scale.svg
• plots/plot-cvfilt.svg
• plots/plot-datares-bw-theme.svg
• plots/plot-datares-palette.svg
• plots/plot-datares.svg
• plots/plot-dimres.svg
• plots/plot-imdanovafilt.svg
• plots/plot-isobaricnormres-bw-theme.svg
• plots/plot-isobaricnormres-global-normalized.svg
• plots/plot-isobaricnormres-palette.svg
• plots/plot-isobaricnormres.svg
• plots/plot-isobaricpepdata.svg
• plots/plot-lipiddata.svg
• plots/plot-metabdata.svg
• plots/plot-moleculefilt-cumulative.svg
• plots/plot-moleculefilt.svg
• plots/plot-nares-bar-group-color.svg
• plots/plot-nares-bar-group-order.svg
• plots/plot-nares-scatter.svg
• plots/plot-nmrdata.svg
• plots/plot-nmrnormres-2.svg
• plots/plot-nmrnormres-color-by.svg
• plots/plot-nmrnormres.svg
• plots/plot-normres.svg
• plots/plot-pepdata.svg
• plots/plot-prodata.svg
• plots/plot-proteomicsfilt-redundancy.svg
• plots/plot-proteomicsfilt.svg
• plots/plot-rmdfilt.svg
• plots/plot-rnafilt.svg
• plots/plot-seqdata.svg
• plots/plot-spansres-bw-theme.svg
• plots/plot-spansres-color-high-color-low.svg
• plots/plot-spansres.svg
• plots/plot-statres-anova-volcano.svg
• plots/plot-statres-anova.svg
• plots/plot-statres-combined-volcano.svg
• plots/plot-statres-combined.svg
• plots/plot-statres-gtest.svg
• plots/plot-totalcountfilt.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.4.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pmartRdata’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.4.5
Check: installed package size
Result: NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
libs 5.0Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64